miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|90442248|gb|DY904131.1|DY904131 CGGGGAATAAAGAGGATCCCACAAANGGGAAAAATAAAGAAAAGGGTAGGAGCAGGAAGCATGGGCACTCTCTTCCTCAT
CGCTTCAATAATAAATCCTTGAGCTCTCTTCTTCTTCCTCCTATCTGAAACCATCGATTGTGCCCGACAAACCCTAGATC
CAACAATTGAATCATCAAGAACCAGTTTTTATTCGAACCTTTGCAAATTTCGCCTTGAATTTCAATTAATACTCCAAACA
TGGTTGGCGGTACAACTCATCAACCGCAACAAGCTCCTCAATTGGCTCGTACATCGTCATCAACAGCAGCTCAGTCTACT
GCACCGGAGGAAGATGAGCTCTTGAAAAGAAACACCGATTGCGTTTATTTTCTTGCTTCTCCATTAACCTGCAAAAAGGG
AAGTGAGTGCGAGTATCGGCATAGCGATATTGCACGGGTCAACCCTAGAGATTGCTGGTACTGGTTAAACGGGAATTGCT
TAAATCCAAAATGTGCTTTCCGTCACCCTCCTCTTGATGGATTGCTGGGATCTGACGTGTCGACTCCCAAGGGACCTCCT
GCACCTGCACCGTATGCTACGCCCAAACAAGGAGTTGCGTGTATCTTCTTTCAAAAAGGTTACTGTTTGAAAGGACACTT
ATGCCCTTTCTTGCACGGGCCATCAAATTCAATCAACAATAAACCTACACAGCCCGGGCCAGCTATTCCCATCACCGAGC
CTCCTAAAACGGTTCAACAAGTATCCGTCCACAAGCCCGTTGAGTTTCAGCCTTCTCTGGGAAACAACCACCTCTTCCAA
CCAGAAACGGCGTTGATAAAAAGATAGCACCACCAGCCGTGGTTCCGCCACCTGTCATCAATGAACCACCGTCTAACAAA
ACT




Most similar to sp|Q9ZUM0|C3H17_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17
           OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1
          Length = 669

 Score =  173 bits (439), Expect = 1e-42
 Identities = 84/137 (61%), Positives = 96/137 (70%), Gaps = 6/137 (4%)
 Frame = +3

Query: 330 EDELLKRNTDCVYFLASPLTCKKGSECEYRHSDIARVNPRDCWYWLNGNCLNPKCAFRHP 509
           E++ LK NTDCVYFLASPLTCKKG ECEYRHS+ AR+NPRDC+YWLNGNCLNPKC FRHP
Sbjct: 25  EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHP 84

Query: 510 PLDGLLGSDVSTPKGPPAPAPYAT------PKQGVACIFFQKGYCLKGHLCPFLHGPSNS 671
           PL+GLLG+    P     P  +AT       KQ V C+FFQKG C+KG +C FLH P N 
Sbjct: 85  PLEGLLGNQGGAPAVSVQPI-HATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTP-NP 142

Query: 672 INNKPTQPGPAIPITEP 722
              K   P  A P T+P
Sbjct: 143 AAYKKQHPVEAKPATDP 159